Mission Impossible?

We make great play in these pages of the wonders of the genetic revolution. So we should. The technology is simply breathtaking, and the amount of data we can gather is so incomprehensibly vast the latest generation of computers is straining at the seams to record it all and, of course, it unveils the vision of a new world. No field has felt the impact more than cancer biology which now holds the promise that, shortly after being found, tumors will be sequenced: on the basis of identified ‘driver’ mutations appropriate drug cocktails will be devised to prevent remission after the initial treatment and these can even be tested in mouse ‘avatars’ to confirm their effectiveness against the patient’s own tumor cells. Finally, even if recurrence sets in at a later date, the same procedure can be repeated and a new drug combo used to target any evolution undergone by the cancer. The era of ‘personalized medicine’ has arrived.

Every Silver Lining …

But there are a few murky clouds drifting across this sky blue portrait of triumph.

  1. The first is that, as we’ve seen in Family Tree of Breast Cancer and Molecular Mosaics, cancers are an incredible mixture – that is, the mutation signature varies depending on the region sampled in primary tumors and is different for individual metastases. This means that a ‘signature’ at best represents a dominant hand of mutations and, worse still, it’s continuously evolving.
  2. The second problem is that, although there are several hundred ‘anti-cancer’ drugs that have been approved for use by the FDA against specific types or stages of cancer, fewer than half a dozen are ‘specific’ – meaning that they hit only tumor cells and leave normal tissue alone. The ‘few’ work because they knock out the activity of mutant proteins that are made only in tumor cells. Notable examples are vemurafinib/Zelboraf (hits the mutated form of BRAF that drives a high proportion of malignant melanomas) and imatinib/Gleevec (blocks the BCR-ABL protein that is formed in most chronic myelogenous leukemias) – and these ‘targetted therapies’ have produced spectacular remissions. Other agents that have attracted much media attention include Herceptin (trastuzumab), a monoclonal antibody that sticks to a protein present in large amounts on the surface of some types of breast cancer cell. This type of agent is highly specific for the protein it targets (i.e. it doesn’t interact with anything else) but it isn’t specific for cancer cells per se. They work because cells heavily loaded with the target get a relatively big hit – a kind of tall poppy syndrome.
  3. Virtually all other chemo agents work on the same principle: in essence they affect every cell they manage to reach and any anti-cancer effect is due to tumor cells being a bit more susceptible. Which is why, of course, the efficacy of any drug combo is to a considerable extent a matter of luck and side effects are such a common problem.
  4. Unquestionably more anti-cancer drugs will be developed, those that do come on line will be more specific and therefore less unpleasant to use, so it may well be that in 20 years time we will have a drug cabinet that is sufficiently well stocked to tackle the major cancers at key stages in their evolution. Which is all well and good but, regardless of how they work and what is meant by ‘specificity’, the biggest problem of all will remain. Resistance – the capacity of tumor cells to neutralize anything that is used with the idea of neutralizing them. They do this by two main routes (1) pumping out the drug and (2) adapting to reduce drug efficacy. The obvious counter is simply to throw more of the drug at them but, in the end, side-effects impose a limit. What this means is that even when drugs have initially startling effects, as do vemurafinib and imatinib, patients eventually become refractive and tumors recur.

MAPK

Cell signalling: cells receive many signals from messengers that attach to receptor proteins spanning the outer membrane. Activated receptors turn on relays of proteins (RAS, A, B, C, D) that talk to the nucleus, switching on genes that drive proliferation. RAS proteins are a focus for many incoming signals and they also set off several relay chains that converge on the nucleus. They work at the cell membrane to which they are escorted from where they’re made by a protein called PDEdelta. A new drug, deltarasin, blocks the escort’s action so that RAS cannot find its way to work and cell growth is arrested.

A Different Line of Attack

In view of that rather gloomy assessment should we try an alternative approach? The personalized scenario involves drug combos tailored to the individual cancer at a given stage of development. But if that seems unlikely to provide a solution remotely near to the ideal, is there another way of selecting targets? Time to try ‘impersonalized medicine’ perhaps?

This notion comes from the thought that what we’re trying to do is block signals that release the brakes on cell proliferation. Many distinct signal pathways impact on the machinery that drives this process, themselves driven by different types of external signal, but it would seem obvious that somewhere along the line these must converge on one or two key regulators – master controllers if you like of cell multiplication. Indeed they do and one of these foci is a protein called RAS (there are three close relatives in the RAS family). RAS is a major junction in cell signalling: many messages from the outside world eventually converge on RAS and lots of pathways radiate from it. When a cell launches itself into the division cycle it does so as an integrated response to these signals.

RAS is mutated to a hyperactive form in about 20% of human cancers (turning on cell growth) so obviously it would be good to have a drug that can hit RAS and an enormous amount of effort has gone into coming up with one. Unfortunately a variety of clever strategies aimed directly at RAS proteins simply haven’t worked. Enter Gunther Zimmermann and his team.

Inhibiting RAS Signalling

RAS proteins do their signaling attached to the inside of the outer membrane of the cell – but they’re made in the interior and to get to their place of work they are escorted to the membrane by a protein called PDEδ (a phosphodiesterase). To upset this cosy arrangement, the Dortmund group developed small molecule, deltarasin, that sticks tightly to the escort which, in response, changes shape just enough to prevent it being able to hold hands  with RAS. The result is that the key signaller (KRAS in fact) is no longer distributed to the membrane. This prevents it working and impairs the growth of KRAS-mutant pancreatic tumour cells.

The great attraction of this approach is that it’s indirect – so the hope is that cells won’t realize that RAS is wandering aimlessly around doing nothing and therefore not simply overwhelm the drug by making more mutant RAS. It remains to be seen how many off-target effects this drug has but for the moment an exciting new idea holds the promise of hitting cancers where it hurts them most – in a key node essential for unregulated cell growth.

References

Baker, N.M. and Der, C.J. (2013). Cancer: Drug for an ‘undruggable’ protein. Nature 497, 577–578.

Zimmermann, G., Papke, B., Ismail, S., Vartak, N., Chandra, A., Hoffmann, M., Hahn, S.A., Triola, G., Wittinghofer, A., Bastiaens, P.I.H. and Waldmann, H. (2013). Small molecule inhibition of the KRAS–PDEδ interaction impairs oncogenic KRAS signaling. Nature 497, 638–642.

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Signs of Resistance

In Beware of Greeks … we noted that in one sort of leukemia at least, tumour cells have come up with an extraordinary way of escaping from the bone marrow where they start life into the circulation where they cause trouble – by releasing pieces of their own DNA that then break down the retaining barrier.

Keeping track of tumors

Curious behaviour though it may be, there’s nothing new about the idea of cells shedding bits of their genetic code – that was first shown to happen over 60 years ago. What is novel is the evidence that not only does this happen in a variety of cancer cells but that modern methods enable those fragments to be isolated from just a teaspoonful of blood: the sequence of the DNA can then be determined – which gives the mutational signature of the original tumour. A remarkable development has now shown that repeating these steps over a period of time can reveal the response of secondary tumours (metastases) to drug treatment (chemotherapy).

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One great advantage of this blood sampling method is that it is as near as makes no difference ‘non-invasive’. That is, it uses only a (small) blood sample and there’s no need for painful excavations to dig out tumour samples. The study, largely funded by Cancer Research UK, looked at three major cancers (breast, ovarian and lung) and identified specific mutations caused by drugs over a period of one to two years. For good measure they also took tumour samples to show that the mutation patterns found in circulating DNA did indeed represent what had gone on in the tumour itself. In other words, they had established what scientists like to call ‘proof of principle’ – i.e. we can do it!

There’s another more subtle advantage of this approach in that it gets round a problem we described in Molecular Mosaics: tumours are a mixture and the mutational signature differs depending on which bit you sample and sequence. The cell-free DNA fragments collected from blood are a gemisch – an averaged signature if you like – that may therefore give a better picture of the target for drug cocktails at any given time during tumour evolution.

Why is this so important?

There are two main reasons why it’s difficult to exaggerate the potential important of this step. The first is that metastasis accounts for over 90% of cancer deaths, the second that the fiendish ingenuity with which tumours negate chemotherapy, i.e. develop drug resistance, is one of the biggest challenges to successful treatment. So, the sooner changes that enable tumours to become insensitive to drugs can be detected the better in terms of adjusting the treatment regime. Even more exciting, however, is that notion that the DNA shed by cancers into the circulation may permit detection years or even decades earlier than is possible with any of the current methods (e.g., mammography) – with screening being carried put routinely from blood samples. Being even more optimistic, very early stage tumours may be particularly susceptible to appropriate drug combos, so that we might look forward to the day when chemotherapy replaces surgery as the first line of treatment for most cancers.

Reference

Murtaza, M. et al., (2013). Non-invasive analysis of acquired resistance to cancer therapy by sequencing of plasma DNA. Nature 497, 108–112.